IL_8UT0_166

3D structure

PDB id

8UT0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.22 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

8UT0|1|A|U|1931

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UT0_166 not in the Motif Atlas

Homologous match to IL_8C3A_084

Geometric discrepancy: 0.0733

The information below is about IL_8C3A_084

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65969.4

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

8UT0|1|A|C|1918
8UT0|1|A|G|1919
8UT0|1|A|U|1920
8UT0|1|A|A|1921
8UT0|1|A|A|1922
8UT0|1|A|C|1923
*
8UT0|1|A|G|1928
8UT0|1|A|G|1929
8UT0|1|A|A|1930
8UT0|1|A|U|1931
8UT0|1|A|A|1932
8UT0|1|A|A|1933
8UT0|1|A|G|1934

Current chains

Chain A

25S rRNA

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain Lp

60S ribosomal protein L41-A

Chain Lr

60S ribosomal protein L43-A