IL_8UT0_174

3D structure

PDB id

8UT0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.22 Å

Loop

Sequence

UCAAAGU*AACCAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UT0_174 not in the Motif Atlas

Homologous match to IL_8C3A_093

Geometric discrepancy: 0.1016

The information below is about IL_8C3A_093

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36973.8

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW-cWW

Number of instances in this motif group

3

Unit IDs

8UT0|1|A|U|2211
8UT0|1|A|C|2212
8UT0|1|A|A|2213
8UT0|1|A|A|2214
8UT0|1|A|A|2215
8UT0|1|A|G|2216
8UT0|1|A|U|2217
*
8UT0|1|A|A|2228
8UT0|1|A|A|2229
8UT0|1|A|C|2230
8UT0|1|A|C|2231
8UT0|1|A|A|2232
8UT0|1|A|A|2233
8UT0|1|A|G|2234

Current chains

Chain A

25S rRNA

Nearby chains

Chain E

60S ribosomal protein L1

Chain Lk

60S ribosomal protein L36-A

Chain Lq

60S ribosomal protein L42-A