IL_8UT0_176
3D structure
- PDB id
- 8UT0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.22 Å
Loop
- Sequence
- CCAAAUGCCUCG*CGCG
- Length
- 16 nucleotides
- Bulged bases
- 8UT0|1|A|A|2281, 8UT0|1|A|C|2287, 8UT0|1|A|C|2306
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8UT0_176 not in the Motif Atlas
- Homologous match to IL_8C3A_095
- Geometric discrepancy: 0.0988
- The information below is about IL_8C3A_095
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_66080.1
- Basepair signature
- cWW-cWW-tSH-L-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
8UT0|1|A|C|2277
8UT0|1|A|C|2278
8UT0|1|A|A|2279
8UT0|1|A|A|2280
8UT0|1|A|A|2281
8UT0|1|A|U|2282
8UT0|1|A|G|2283
8UT0|1|A|C|2284
8UT0|1|A|C|2285
8UT0|1|A|U|2286
8UT0|1|A|C|2287
8UT0|1|A|G|2288
*
8UT0|1|A|C|2304
8UT0|1|A|G|2305
8UT0|1|A|C|2306
8UT0|1|A|G|2307
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain Lp
- 60S ribosomal protein L41-A
- Chain m
- Transfer RNA; tRNA
Coloring options: