IL_8UT0_201

3D structure

PDB id

8UT0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.22 Å

Loop

Sequence

CAAU*AGAACG

Length

10 nucleotides

Bulged bases

8UT0|1|A|A|3142, 8UT0|1|A|C|3143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UT0_201 not in the Motif Atlas

Homologous match to IL_8P9A_342

Geometric discrepancy: 0.1002

The information below is about IL_8P9A_342

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

8UT0|1|A|C|3004
8UT0|1|A|A|3005
8UT0|1|A|A|3006
8UT0|1|A|U|3007
*
8UT0|1|A|A|3139
8UT0|1|A|G|3140
8UT0|1|A|A|3141
8UT0|1|A|A|3142
8UT0|1|A|C|3143
8UT0|1|A|G|3144

Current chains

Chain A

25S rRNA

Nearby chains

Chain C

5.8S ribosomal RNA; 5.8S rRNA

Chain LE

60S ribosomal protein L3

Chain LQ

60S ribosomal protein L16-A