3D structure

PDB id
8UT0 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Eukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
3.22 Å

Loop

Sequence
UACGAAUAAG*CGCUGAA
Length
17 nucleotides
Bulged bases
8UT0|1|A|A|3180, 8UT0|1|A|A|3186, 8UT0|1|A|C|3206, 8UT0|1|A|U|3207, 8UT0|1|A|A|3209
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8UT0_211 not in the Motif Atlas
Homologous match to IL_8P9A_352
Geometric discrepancy: 0.121
The information below is about IL_8P9A_352
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_42231.1
Basepair signature
cWW-L-R-L-cWW-L-cWW-cSS-L
Number of instances in this motif group
2

Unit IDs

8UT0|1|A|U|3179
8UT0|1|A|A|3180
8UT0|1|A|C|3181
8UT0|1|A|G|3182
8UT0|1|A|A|3183
8UT0|1|A|A|3184
8UT0|1|A|U|3185
8UT0|1|A|A|3186
8UT0|1|A|A|3187
8UT0|1|A|G|3188
*
8UT0|1|A|C|3204
8UT0|1|A|G|3205
8UT0|1|A|C|3206
8UT0|1|A|U|3207
8UT0|1|A|G|3208
8UT0|1|A|A|3209
8UT0|1|A|A|3210

Current chains

Chain A
25S rRNA

Nearby chains

Chain LH
60S ribosomal protein L6-B
Chain LK
60S ribosomal protein L9-A
Chain LO
60S ribosomal protein L14-A
Chain LQ
60S ribosomal protein L16-A
Chain LU
60S ribosomal protein L20-A
Chain Lh
60S ribosomal protein L33-A

Coloring options:


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