IL_8UTI_129

3D structure

PDB id

8UTI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with Reh1 and A/P site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

AGAG*CGAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UTI_129 not in the Motif Atlas

Homologous match to IL_8P9A_362

Geometric discrepancy: 0.1344

The information below is about IL_8P9A_362

Detailed Annotation

Double sheared; A in syn

Broad Annotation

Double sheared

Motif group

IL_58355.1

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

44

Unit IDs

8UTI|1|A|A|3342
8UTI|1|A|G|3343
8UTI|1|A|A|3344
8UTI|1|A|G|3345
*
8UTI|1|A|C|3360
8UTI|1|A|G|3361
8UTI|1|A|A|3362
8UTI|1|A|U|3363

Current chains

Chain A

25S rRNA

Nearby chains

Chain LT

60S ribosomal protein L19-A

Chain LW

60S ribosomal protein L22-A

Chain SV

40S ribosomal protein S8-A