IL_8UTI_157

3D structure

PDB id

8UTI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with Reh1 and A/P site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

UAUCAA*UUUCAACG

Length

14 nucleotides

Bulged bases

8UTI|1|E|U|313, 8UTI|1|E|C|351

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UTI_157 not in the Motif Atlas

Homologous match to IL_8P9A_391

Geometric discrepancy: 0.1021

The information below is about IL_8P9A_391

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.4

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

6

Unit IDs

8UTI|1|E|U|311
8UTI|1|E|A|312
8UTI|1|E|U|313
8UTI|1|E|C|314
8UTI|1|E|A|315
8UTI|1|E|A|316
*
8UTI|1|E|U|348
8UTI|1|E|U|349
8UTI|1|E|U|350
8UTI|1|E|C|351
8UTI|1|E|A|352
8UTI|1|E|A|353
8UTI|1|E|C|354
8UTI|1|E|G|355

Current chains

Chain E

18S rRNA

Nearby chains

Chain SV

40S ribosomal protein S8-A

Chain SX

40S ribosomal protein S11-A

Chain Sc

40S ribosomal protein S23-A