IL_8UTJ_072

3D structure

PDB id

8UTJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified lys-tRNAPro(GGG) bound to slippery P-site CCC-C codon in the 0 frame

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

8UTJ|1|1|A|1801, 8UTJ|1|1|C|1816, 8UTJ|1|1|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UTJ_072 not in the Motif Atlas

Geometric match to IL_5J7L_313

Geometric discrepancy: 0.1049

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

8UTJ|1|1|U|1798
8UTJ|1|1|G|1799
8UTJ|1|1|C|1800
8UTJ|1|1|A|1801
8UTJ|1|1|A|1802
8UTJ|1|1|A|1803
8UTJ|1|1|C|1804
*
8UTJ|1|1|G|1813
8UTJ|1|1|G|1814
8UTJ|1|1|A|1815
8UTJ|1|1|C|1816
8UTJ|1|1|G|1817
8UTJ|1|1|U|1818
8UTJ|1|1|A|1819
8UTJ|1|1|U|1820
8UTJ|1|1|A|1821

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain B

50S ribosomal protein L2