IL_8UU4_078
3D structure
- PDB id
- 8UU4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Listeria innocua 70S ribosome in complex with HPF (structure I-A)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CGAAAUUCCUUG*CCCG
- Length
- 16 nucleotides
- Bulged bases
- 8UU4|1|A|A|1971, 8UU4|1|A|U|1977, 8UU4|1|A|C|1996
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8UU4_078 not in the Motif Atlas
- Geometric match to IL_4WF9_077
- Geometric discrepancy: 0.0977
- The information below is about IL_4WF9_077
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_84014.1
- Basepair signature
- cWW-L-R-cHW-cWW-L-L-tSW-L
- Number of instances in this motif group
- 8
Unit IDs
8UU4|1|A|C|1967
8UU4|1|A|G|1968
8UU4|1|A|A|1969
8UU4|1|A|A|1970
8UU4|1|A|A|1971
8UU4|1|A|U|1972
8UU4|1|A|U|1973
8UU4|1|A|C|1974
8UU4|1|A|C|1975
8UU4|1|A|U|1976
8UU4|1|A|U|1977
8UU4|1|A|G|1978
*
8UU4|1|A|C|1994
8UU4|1|A|C|1995
8UU4|1|A|C|1996
8UU4|1|A|G|1997
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain C
- Large ribosomal subunit protein uL2
- Chain a
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: