IL_8UU4_152
3D structure
- PDB id
- 8UU4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Listeria innocua 70S ribosome in complex with HPF (structure I-A)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- UGUAG*CGUAGAUA
- Length
- 13 nucleotides
- Bulged bases
- 8UU4|1|a|A|710
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8UU4_152 not in the Motif Atlas
- Homologous match to IL_5J7L_035
- Geometric discrepancy: 0.1226
- The information below is about IL_5J7L_035
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_01488.3
- Basepair signature
- cWW-tSS-tSH-L-R-tHS-L-cWW
- Number of instances in this motif group
- 10
Unit IDs
8UU4|1|a|U|692
8UU4|1|a|G|693
8UU4|1|a|U|694
8UU4|1|a|A|695
8UU4|1|a|G|696
*
8UU4|1|a|C|707
8UU4|1|a|G|708
8UU4|1|a|U|709
8UU4|1|a|A|710
8UU4|1|a|G|711
8UU4|1|a|A|712
8UU4|1|a|U|713
8UU4|1|a|A|714
Current chains
- Chain a
- 16S Ribosomal RNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain k
- Small ribosomal subunit protein uS11
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