IL_8UU4_182
3D structure
- PDB id
- 8UU4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Listeria innocua 70S ribosome in complex with HPF (structure I-A)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CCGAAG*CGAAG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8UU4_182 not in the Motif Atlas
- Homologous match to IL_5J7L_063
- Geometric discrepancy: 0.1881
- The information below is about IL_5J7L_063
- Detailed Annotation
- Triple sheared related
- Broad Annotation
- Triple sheared
- Motif group
- IL_80231.1
- Basepair signature
- cWW-L-R-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 2
Unit IDs
8UU4|1|a|C|1437
8UU4|1|a|C|1438
8UU4|1|a|G|1439
8UU4|1|a|A|1440
8UU4|1|a|A|1441
8UU4|1|a|G|1442
*
8UU4|1|a|C|1474
8UU4|1|a|G|1475
8UU4|1|a|A|1476
8UU4|1|a|A|1477
8UU4|1|a|G|1478
Current chains
- Chain a
- 16S Ribosomal RNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain R
- Large ribosomal subunit protein bL19
- Chain t
- Small ribosomal subunit protein bS20
Coloring options: