IL_8UU5_039

3D structure

PDB id

8UU5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Listeria innocua 70S ribosome (head-swiveled) in complex with pe/E-tRNA (structure I-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

8UU5|1|A|A|1189

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UU5_039 not in the Motif Atlas

Geometric match to IL_5J7L_280

Geometric discrepancy: 0.0826

The information below is about IL_5J7L_280

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.5

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

8UU5|1|A|U|1064
8UU5|1|A|U|1065
8UU5|1|A|A|1066
8UU5|1|A|A|1067
8UU5|1|A|G|1068
8UU5|1|A|U|1069
8UU5|1|A|G|1070
*
8UU5|1|A|C|1186
8UU5|1|A|U|1187
8UU5|1|A|A|1188
8UU5|1|A|A|1189
8UU5|1|A|A|1190

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 8

Large ribosomal subunit protein bL36

Chain G

Large ribosomal subunit protein uL6

Chain L

Large ribosomal subunit protein uL13