IL_8UU7_041

3D structure

PDB id

8UU7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Listeria innocua 70S ribosome in complex with HflXr, HPF, and E-site tRNA (structure II-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

8UU7|1|A|A|1189

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UU7_041 not in the Motif Atlas

Geometric match to IL_5J7L_280

Geometric discrepancy: 0.1548

The information below is about IL_5J7L_280

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.5

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

8UU7|1|A|U|1064
8UU7|1|A|U|1065
8UU7|1|A|A|1066
8UU7|1|A|A|1067
8UU7|1|A|G|1068
8UU7|1|A|U|1069
8UU7|1|A|G|1070
*
8UU7|1|A|C|1186
8UU7|1|A|U|1187
8UU7|1|A|A|1188
8UU7|1|A|A|1189
8UU7|1|A|A|1190

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 8

Large ribosomal subunit protein bL36

Chain L

Large ribosomal subunit protein uL13