IL_8UU7_046

3D structure

PDB id

8UU7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Listeria innocua 70S ribosome in complex with HflXr, HPF, and E-site tRNA (structure II-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUUG*CACC

Length

8 nucleotides

Bulged bases

8UU7|1|A|U|1107

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UU7_046 not in the Motif Atlas

Homologous match to IL_6PRV_001

Geometric discrepancy: 0.3241

The information below is about IL_6PRV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28482.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

4

Unit IDs

8UU7|1|A|G|1105
8UU7|1|A|U|1106
8UU7|1|A|U|1107
8UU7|1|A|G|1108
*
8UU7|1|A|C|1122
8UU7|1|A|A|1123
8UU7|1|A|C|1124
8UU7|1|A|C|1125

Current chains

Chain A

23S Ribosomal RNA

Nearby chains