IL_8UU7_087

3D structure

PDB id

8UU7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Listeria innocua 70S ribosome in complex with HflXr, HPF, and E-site tRNA (structure II-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUUUG*UGACC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UU7_087 not in the Motif Atlas

Homologous match to IL_4WF9_084

Geometric discrepancy: 0.4765

The information below is about IL_4WF9_084

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

8UU7|1|A|G|2130
8UU7|1|A|U|2131
8UU7|1|A|U|2132
8UU7|1|A|U|2133
8UU7|1|A|G|2134
*
8UU7|1|A|U|2221
8UU7|1|A|G|2222
8UU7|1|A|A|2223
8UU7|1|A|C|2224
8UU7|1|A|C|2225

Current chains

Chain A

23S Ribosomal RNA

Nearby chains