IL_8UU8_086

3D structure

PDB id

8UU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Listeria innocua 70S ribosome (head-swiveled) in complex with HflXr and pe/E-tRNA (structure II-C)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUUG*CUGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UU8_086 not in the Motif Atlas

Geometric match to IL_1CSL_001

Geometric discrepancy: 0.2831

The information below is about IL_1CSL_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_59580.1

Basepair signature

cWW-cHW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

8UU8|1|A|C|2140
8UU8|1|A|U|2141
8UU8|1|A|U|2142
8UU8|1|A|G|2143
*
8UU8|1|A|C|2212
8UU8|1|A|U|2213
8UU8|1|A|G|2214
8UU8|1|A|G|2215

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain x

Transfer RNA; tRNA