IL_8UU8_106

3D structure

PDB id

8UU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Listeria innocua 70S ribosome (head-swiveled) in complex with HflXr and pe/E-tRNA (structure II-C)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UU8_106 not in the Motif Atlas

Homologous match to IL_7A0S_094

Geometric discrepancy: 0.105

The information below is about IL_7A0S_094

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.5

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

8UU8|1|A|U|2685
8UU8|1|A|U|2686
8UU8|1|A|A|2687
8UU8|1|A|G|2688
8UU8|1|A|U|2689
8UU8|1|A|A|2690
8UU8|1|A|C|2691
*
8UU8|1|A|G|2696
8UU8|1|A|G|2697
8UU8|1|A|A|2698
8UU8|1|A|C|2699
8UU8|1|A|C|2700
8UU8|1|A|G|2701

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain G

Large ribosomal subunit protein uL6