IL_8UU8_109

3D structure

PDB id

8UU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Listeria innocua 70S ribosome (head-swiveled) in complex with HflXr and pe/E-tRNA (structure II-C)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UU*AUCG

Length

6 nucleotides

Bulged bases

8UU8|1|A|U|2745, 8UU8|1|A|C|2746

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UU8_109 not in the Motif Atlas

Homologous match to IL_4WF9_103

Geometric discrepancy: 0.1156

The information below is about IL_4WF9_103

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_44609.2

Basepair signature

cWW-cWW

Number of instances in this motif group

24

Unit IDs

8UU8|1|A|U|2728
8UU8|1|A|U|2729
*
8UU8|1|A|A|2744
8UU8|1|A|U|2745
8UU8|1|A|C|2746
8UU8|1|A|G|2747

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain P

Large ribosomal subunit protein bL17

Chain R

Large ribosomal subunit protein bL19