IL_8UU8_129

3D structure

PDB id

8UU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Listeria innocua 70S ribosome (head-swiveled) in complex with HflXr and pe/E-tRNA (structure II-C)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

8UU8|1|a|U|172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UU8_129 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.1451

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

8UU8|1|a|G|146
8UU8|1|a|G|147
8UU8|1|a|A|148
8UU8|1|a|U|149
8UU8|1|a|A|150
8UU8|1|a|A|151
8UU8|1|a|C|152
*
8UU8|1|a|G|167
8UU8|1|a|C|168
8UU8|1|a|U|169
8UU8|1|a|A|170
8UU8|1|a|A|171
8UU8|1|a|U|172
8UU8|1|a|A|173
8UU8|1|a|C|174

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain t

Small ribosomal subunit protein bS20