IL_8UU8_158
3D structure
- PDB id
- 8UU8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Listeria innocua 70S ribosome (head-swiveled) in complex with HflXr and pe/E-tRNA (structure II-C)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CAUG*CGUG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Self-complementary:
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8UU8_158 not in the Motif Atlas
- Geometric match to IL_1D4R_001
- Geometric discrepancy: 0.3068
- The information below is about IL_1D4R_001
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.1
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 33
Unit IDs
8UU8|1|a|C|957
8UU8|1|a|A|958
8UU8|1|a|U|959
8UU8|1|a|G|960
*
8UU8|1|a|C|1237
8UU8|1|a|G|1238
8UU8|1|a|U|1239
8UU8|1|a|G|1240
Current chains
- Chain a
- 16S Ribosomal RNA
Nearby chains
- Chain i
- Small ribosomal subunit protein uS9
- Chain m
- Small ribosomal subunit protein uS13
- Chain x
- Transfer RNA; tRNA
Coloring options: