IL_8UU9_042

3D structure

PDB id

8UU9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ratcheted Listeria innocua 70S ribosome (head-swiveled) in complex with HflXr and pe/E-tRNA (structure II-D)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUUG*CACC

Length

8 nucleotides

Bulged bases

8UU9|1|A|U|1107

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UU9_042 not in the Motif Atlas

Homologous match to IL_6PRV_001

Geometric discrepancy: 0.3052

The information below is about IL_6PRV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28482.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

4

Unit IDs

8UU9|1|A|G|1105
8UU9|1|A|U|1106
8UU9|1|A|U|1107
8UU9|1|A|G|1108
*
8UU9|1|A|C|1122
8UU9|1|A|A|1123
8UU9|1|A|C|1124
8UU9|1|A|C|1125

Current chains

Chain A

23S Ribosomal RNA

Nearby chains