3D structure

PDB id
8UU9 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the ratcheted Listeria innocua 70S ribosome (head-swiveled) in complex with HflXr and pe/E-tRNA (structure II-D)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
GUGCCAG*CGGUAAUAC
Length
16 nucleotides
Bulged bases
8UU9|1|a|A|540, 8UU9|1|a|U|542
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8UU9_139 not in the Motif Atlas
Geometric match to IL_4V88_415
Geometric discrepancy: 0.1218
The information below is about IL_4V88_415
Detailed Annotation
Kink-turn related
Broad Annotation
No text annotation
Motif group
IL_54177.1
Basepair signature
cWW-cSW-tWH-L-R-L-R-tHS-cWW
Number of instances in this motif group
5

Unit IDs

8UU9|1|a|G|523
8UU9|1|a|U|524
8UU9|1|a|G|525
8UU9|1|a|C|526
8UU9|1|a|C|527
8UU9|1|a|A|528
8UU9|1|a|G|529
*
8UU9|1|a|C|536
8UU9|1|a|G|537
8UU9|1|a|G|538
8UU9|1|a|U|539
8UU9|1|a|A|540
8UU9|1|a|A|541
8UU9|1|a|U|542
8UU9|1|a|A|543
8UU9|1|a|C|544

Current chains

Chain a
16S Ribosomal RNA

Nearby chains

Chain c
Small ribosomal subunit protein uS3
Chain l
Small ribosomal subunit protein uS12

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1378 s