IL_8UX8_040

3D structure

PDB id

8UX8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified Lys-tRNAPro(GGG) bound to slippery P-site CCC-C codon in the +1 mRNA reading frame

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAAA*UC

Length

6 nucleotides

Bulged bases

8UX8|1|1|A|1088, 8UX8|1|1|A|1089

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UX8_040 not in the Motif Atlas

Geometric match to IL_1NBS_009

Geometric discrepancy: 0.1741

The information below is about IL_1NBS_009

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_82107.5

Basepair signature

cWW-cWW

Number of instances in this motif group

31

Unit IDs

8UX8|1|1|G|1087
8UX8|1|1|A|1088
8UX8|1|1|A|1089
8UX8|1|1|A|1090
*
8UX8|1|1|U|1101
8UX8|1|1|C|1102

Current chains

Chain 1

23S rRNA

Nearby chains

Chain f

50S ribosomal protein L36