IL_8UXA_058
3D structure
- PDB id
- 8UXA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Glucose treated mitochondrial ribosome of saccharomyces cerevisiae class I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CGAAAUUCCUUG*CCCG
- Length
- 16 nucleotides
- Bulged bases
- 8UXA|1|A|A|1838, 8UXA|1|A|U|1844, 8UXA|1|A|C|1863
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8UXA_058 not in the Motif Atlas
- Geometric match to IL_8B0X_138
- Geometric discrepancy: 0.1162
- The information below is about IL_8B0X_138
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_84014.1
- Basepair signature
- cWW-L-R-cHW-cWW-L-L-tSW-L
- Number of instances in this motif group
- 8
Unit IDs
8UXA|1|A|C|1834
8UXA|1|A|G|1835
8UXA|1|A|A|1836
8UXA|1|A|A|1837
8UXA|1|A|A|1838
8UXA|1|A|U|1839
8UXA|1|A|U|1840
8UXA|1|A|C|1841
8UXA|1|A|C|1842
8UXA|1|A|U|1843
8UXA|1|A|U|1844
8UXA|1|A|G|1845
*
8UXA|1|A|C|1861
8UXA|1|A|C|1862
8UXA|1|A|C|1863
8UXA|1|A|G|1864
Current chains
- Chain A
- Large ribosomal subunit rRNA
Nearby chains
- Chain AA
- Small ribosomal subunit protein mS38
- Chain AL
- Small subunit ribosomal RNA; SSU rRNA
- Chain B
- Large ribosomal subunit protein uL2m
Coloring options: