IL_8UYP_072

3D structure

PDB id

8UYP (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-1 5' proximal stem-loop 5

Experimental method

ELECTRON MICROSCOPY

Resolution

7.1 Å

Loop

Sequence

GCAG*CGAUCAUC

Length

12 nucleotides

Bulged bases

8UYP|17|A|A|186, 8UYP|17|A|G|218, 8UYP|17|A|A|219, 8UYP|17|A|U|220, 8UYP|17|A|C|221

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UYP_072 not in the Motif Atlas

Geometric match to IL_7RQB_031

Geometric discrepancy: 0.3188

The information below is about IL_7RQB_031

Detailed Annotation

Minor groove platform with extra cWW

Broad Annotation

Minor groove platform

Motif group

IL_46796.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

6

Unit IDs

8UYP|17|A|G|184
8UYP|17|A|C|185
8UYP|17|A|A|186
8UYP|17|A|G|187
*
8UYP|17|A|C|217
8UYP|17|A|G|218
8UYP|17|A|A|219
8UYP|17|A|U|220
8UYP|17|A|C|221
8UYP|17|A|A|222
8UYP|17|A|U|223
8UYP|17|A|C|224

Current chains

Chain A

SARS-CoV-1 5' proximal stem-loop 5

Nearby chains