IL_8UYP_123

3D structure

PDB id

8UYP (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-1 5' proximal stem-loop 5

Experimental method

ELECTRON MICROSCOPY

Resolution

7.1 Å

Loop

Sequence

GCAG*CGAUCAUC

Length

12 nucleotides

Bulged bases

8UYP|4|A|C|221, 8UYP|4|A|A|222

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UYP_123 not in the Motif Atlas

Geometric match to IL_5J7L_033

Geometric discrepancy: 0.342

The information below is about IL_5J7L_033

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

8UYP|4|A|G|184
8UYP|4|A|C|185
8UYP|4|A|A|186
8UYP|4|A|G|187
*
8UYP|4|A|C|217
8UYP|4|A|G|218
8UYP|4|A|A|219
8UYP|4|A|U|220
8UYP|4|A|C|221
8UYP|4|A|A|222
8UYP|4|A|U|223
8UYP|4|A|C|224

Current chains

Chain A

SARS-CoV-1 5' proximal stem-loop 5

Nearby chains