3D structure

PDB id
8UZ3 (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S ribosome with unmodified e*/E-tRNAPro(GGG) bound to slippery P-site CCC-C codon
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
CCAAG*CGACG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8UZ3_090 not in the Motif Atlas
Geometric match to IL_7A0S_087
Geometric discrepancy: 0.2061
The information below is about IL_7A0S_087
Detailed Annotation
Double sheared with non-canonical cWW
Broad Annotation
Double sheared
Motif group
IL_87767.1
Basepair signature
cWW-L-R-tSH-tHS-cWW
Number of instances in this motif group
16

Unit IDs

8UZ3|1|1|C|2466
8UZ3|1|1|C|2467
8UZ3|1|1|A|2468
8UZ3|1|1|A|2469
8UZ3|1|1|G|2470
*
8UZ3|1|1|C|2480
8UZ3|1|1|G|2481
8UZ3|1|1|A|2482
8UZ3|1|1|C|2483
8UZ3|1|1|G|2484

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain M
50S ribosomal protein L16
Chain f
50S ribosomal protein L36

Coloring options:


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