3D structure

PDB id
8UZ3 (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S ribosome with unmodified e*/E-tRNAPro(GGG) bound to slippery P-site CCC-C codon
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
UAGAG*UGGA
Length
9 nucleotides
Bulged bases
8UZ3|1|2|A|665
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8UZ3_134 not in the Motif Atlas
Geometric match to IL_5J7L_033
Geometric discrepancy: 0.1633
The information below is about IL_5J7L_033
Detailed Annotation
Tandem non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_85033.2
Basepair signature
cWW-cWW-cWW-cWW
Number of instances in this motif group
35

Unit IDs

8UZ3|1|2|U|662
8UZ3|1|2|A|663
8UZ3|1|2|G|664
8UZ3|1|2|A|665
8UZ3|1|2|G|666
*
8UZ3|1|2|U|740
8UZ3|1|2|G|741
8UZ3|1|2|G|742
8UZ3|1|2|A|743

Current chains

Chain 2
16S ribosomal RNA

Nearby chains

Chain k
30S ribosomal protein S6
Chain t
30S ribosomal protein S15
Chain w
30S ribosomal protein S18
Chain z
30S ribosomal protein S21

Coloring options:


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