IL_8UZ3_139

3D structure

PDB id

8UZ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified e*/E-tRNAPro(GGG) bound to slippery P-site CCC-C codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGAGUACG*UAAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UZ3_139 not in the Motif Atlas

Geometric match to IL_5J7L_038

Geometric discrepancy: 0.1429

The information below is about IL_5J7L_038

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

8UZ3|1|2|G|887
8UZ3|1|2|G|888
8UZ3|1|2|A|889
8UZ3|1|2|G|890
8UZ3|1|2|U|891
8UZ3|1|2|A|892
8UZ3|1|2|C|893
8UZ3|1|2|G|894
*
8UZ3|1|2|U|905
8UZ3|1|2|A|906
8UZ3|1|2|A|907
8UZ3|1|2|A|908
8UZ3|1|2|A|909
8UZ3|1|2|C|910

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain q

30S ribosomal protein S12