IL_8V03_069

3D structure

PDB id

8V03 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified P/E-tRNAPro(GGG) bound to slippery P-site CCC-C codon

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

8V03|1|1|A|1801, 8V03|1|1|C|1816, 8V03|1|1|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8V03_069 not in the Motif Atlas

Geometric match to IL_5J7L_313

Geometric discrepancy: 0.1418

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

8V03|1|1|U|1798
8V03|1|1|G|1799
8V03|1|1|C|1800
8V03|1|1|A|1801
8V03|1|1|A|1802
8V03|1|1|A|1803
8V03|1|1|C|1804
*
8V03|1|1|G|1813
8V03|1|1|G|1814
8V03|1|1|A|1815
8V03|1|1|C|1816
8V03|1|1|G|1817
8V03|1|1|U|1818
8V03|1|1|A|1819
8V03|1|1|U|1820
8V03|1|1|A|1821

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain B

50S ribosomal protein L2