IL_8V03_146

3D structure

PDB id

8V03 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified P/E-tRNAPro(GGG) bound to slippery P-site CCC-C codon

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UGUAG*CGUAGAGA

Length

13 nucleotides

Bulged bases

8V03|1|2|A|702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8V03_146 not in the Motif Atlas

Geometric match to IL_5J7L_035

Geometric discrepancy: 0.1626

The information below is about IL_5J7L_035

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_01488.3

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

10

Unit IDs

8V03|1|2|U|684
8V03|1|2|G|685
8V03|1|2|U|686
8V03|1|2|A|687
8V03|1|2|G|688
*
8V03|1|2|C|699
8V03|1|2|G|700
8V03|1|2|U|701
8V03|1|2|A|702
8V03|1|2|G|703
8V03|1|2|A|704
8V03|1|2|G|705
8V03|1|2|A|706

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain B

50S ribosomal protein L2

Chain p

30S ribosomal protein S11