IL_8V83_023
3D structure
- PDB id
- 8V83 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S ribosome biogenesis intermediate (Dbp10 pre-catalytic structure - Overall map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.53 Å
Loop
- Sequence
- GGGG*UGCAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8V83_023 not in the Motif Atlas
- Geometric match to IL_5J7L_303
- Geometric discrepancy: 0.1849
- The information below is about IL_5J7L_303
- Detailed Annotation
- UAA/GAN variation
- Broad Annotation
- UAA/GAN variation
- Motif group
- IL_23774.1
- Basepair signature
- cWW-L-R-L-tHS-cWW
- Number of instances in this motif group
- 11
Unit IDs
8V83|1|1|G|725
8V83|1|1|G|726
8V83|1|1|G|727
8V83|1|1|G|728
*
8V83|1|1|U|741
8V83|1|1|G|742
8V83|1|1|C|743
8V83|1|1|A|744
8V83|1|1|C|745
Current chains
- Chain 1
- Saccharomyces cerevisiae S288C 25S ribosomal RNA
Nearby chains
- Chain Q
- 60S ribosomal protein L18-A
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