3D structure

PDB id
8V83 (explore in PDB, NAKB, or RNA 3D Hub)
Description
60S ribosome biogenesis intermediate (Dbp10 pre-catalytic structure - Overall map)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.53 Å

Loop

Sequence
GGGG*UGCAC
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8V83_023 not in the Motif Atlas
Geometric match to IL_5J7L_303
Geometric discrepancy: 0.1849
The information below is about IL_5J7L_303
Detailed Annotation
UAA/GAN variation
Broad Annotation
UAA/GAN variation
Motif group
IL_23774.1
Basepair signature
cWW-L-R-L-tHS-cWW
Number of instances in this motif group
11

Unit IDs

8V83|1|1|G|725
8V83|1|1|G|726
8V83|1|1|G|727
8V83|1|1|G|728
*
8V83|1|1|U|741
8V83|1|1|G|742
8V83|1|1|C|743
8V83|1|1|A|744
8V83|1|1|C|745

Current chains

Chain 1
Saccharomyces cerevisiae S288C 25S ribosomal RNA

Nearby chains

Chain Q
60S ribosomal protein L18-A

Coloring options:


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