3D structure

PDB id
8V83 (explore in PDB, NAKB, or RNA 3D Hub)
Description
60S ribosome biogenesis intermediate (Dbp10 pre-catalytic structure - Overall map)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.53 Å

Loop

Sequence
AGG*CU
Length
5 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8V83_061 not in the Motif Atlas
Geometric match to IL_8P9A_367
Geometric discrepancy: 0.394
The information below is about IL_8P9A_367
Detailed Annotation
Single stack bend
Broad Annotation
No text annotation
Motif group
IL_90729.1
Basepair signature
cWW-L-cWW
Number of instances in this motif group
30

Unit IDs

8V83|1|1|A|2449
8V83|1|1|G|2450
8V83|1|1|G|2451
*
8V83|1|1|C|2496
8V83|1|1|U|2497

Current chains

Chain 1
Saccharomyces cerevisiae S288C 25S ribosomal RNA

Nearby chains

Chain q
25S rRNA (cytosine(2870)-C(5))-methyltransferase

Coloring options:


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