IL_8V83_063
3D structure
- PDB id
- 8V83 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S ribosome biogenesis intermediate (Dbp10 pre-catalytic structure - Overall map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.53 Å
Loop
- Sequence
- GGAG*CGCCAGUGAAAUAC
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8V83_063 not in the Motif Atlas
- Geometric match to IL_3U4M_003
- Geometric discrepancy: 0.3095
- The information below is about IL_3U4M_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_75283.2
- Basepair signature
- cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R
- Number of instances in this motif group
- 3
Unit IDs
8V83|1|1|G|2466
8V83|1|1|G|2467
8V83|1|1|A|2468
8V83|1|1|G|2469
*
8V83|1|1|C|2476
8V83|1|1|G|2477
8V83|1|1|C|2478
8V83|1|1|C|2479
8V83|1|1|A|2480
8V83|1|1|G|2481
8V83|1|1|U|2482
8V83|1|1|G|2483
8V83|1|1|A|2484
8V83|1|1|A|2485
8V83|1|1|A|2486
8V83|1|1|U|2487
8V83|1|1|A|2488
8V83|1|1|C|2489
Current chains
- Chain 1
- Saccharomyces cerevisiae S288C 25S ribosomal RNA
Nearby chains
- Chain a
- Large ribosomal subunit protein uL1A
- Chain q
- 25S rRNA (cytosine(2870)-C(5))-methyltransferase
Coloring options: