3D structure

PDB id
8V83 (explore in PDB, NAKB, or RNA 3D Hub)
Description
60S ribosome biogenesis intermediate (Dbp10 pre-catalytic structure - Overall map)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.53 Å

Loop

Sequence
CAACG*UUG
Length
8 nucleotides
Bulged bases
8V83|1|1|U|3259
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8V83_077 not in the Motif Atlas
Geometric match to IL_5TBW_126
Geometric discrepancy: 0.1752
The information below is about IL_5TBW_126
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_60154.1
Basepair signature
cWW-L-cWW-L-L
Number of instances in this motif group
3

Unit IDs

8V83|1|1|C|3225
8V83|1|1|A|3226
8V83|1|1|A|3227
8V83|1|1|C|3228
8V83|1|1|G|3229
*
8V83|1|1|U|3258
8V83|1|1|U|3259
8V83|1|1|G|3260

Current chains

Chain 1
Saccharomyces cerevisiae S288C 25S ribosomal RNA

Nearby chains

Chain E
60S ribosomal protein L6-A
Chain M
60S ribosomal protein L14-A
Chain O
Large ribosomal subunit protein uL13A
Chain f
60S ribosomal protein L33-A

Coloring options:


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