IL_8V83_084

3D structure

PDB id

8V83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosome biogenesis intermediate (Dbp10 pre-catalytic structure - Overall map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.53 Å

Loop

Sequence

UGUAAG*CUGAG

Length

11 nucleotides

Bulged bases

8V83|1|1|G|3369

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8V83_084 not in the Motif Atlas

Geometric match to IL_5TBW_133

Geometric discrepancy: 0.1265

The information below is about IL_5TBW_133

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_83162.8

Basepair signature

cWW-cWW-tSH-cWW-tHH-L

Number of instances in this motif group

4

Unit IDs

8V83|1|1|U|3332
8V83|1|1|G|3333
8V83|1|1|U|3334
8V83|1|1|A|3335
8V83|1|1|A|3336
8V83|1|1|G|3337
*
8V83|1|1|C|3367
8V83|1|1|U|3368
8V83|1|1|G|3369
8V83|1|1|A|3370
8V83|1|1|G|3371

Current chains

Chain 1

Saccharomyces cerevisiae S288C 25S ribosomal RNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain Z

Ribosome biogenesis protein SSF1

Chain u

Ribosome biogenesis protein RLP24