IL_8V83_087
3D structure
- PDB id
- 8V83 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S ribosome biogenesis intermediate (Dbp10 pre-catalytic structure - Overall map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.53 Å
Loop
- Sequence
- ACGCAGCGAAAUGCGAUACGU*AAUCU
- Length
- 26 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8V83_087 not in the Motif Atlas
- Geometric match to IL_5TBW_144
- Geometric discrepancy: 0.1426
- The information below is about IL_5TBW_144
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_44998.1
- Basepair signature
- cWW-cWW-R-cWW-tSS-R-cWW-cWW-L-cWW-L-L-L-cWW-L-cSS-L-R-L-R
- Number of instances in this motif group
- 2
Unit IDs
8V83|1|2|A|44
8V83|1|2|C|45
8V83|1|2|G|46
8V83|1|2|C|47
8V83|1|2|A|48
8V83|1|2|G|49
8V83|1|2|C|50
8V83|1|2|G|51
8V83|1|2|A|52
8V83|1|2|A|53
8V83|1|2|A|54
8V83|1|2|U|55
8V83|1|2|G|56
8V83|1|2|C|57
8V83|1|2|G|58
8V83|1|2|A|59
8V83|1|2|U|60
8V83|1|2|A|61
8V83|1|2|C|62
8V83|1|2|G|63
8V83|1|2|U|64
*
8V83|1|2|A|96
8V83|1|2|A|97
8V83|1|2|U|98
8V83|1|2|C|99
8V83|1|2|U|100
Current chains
- Chain 2
- Saccharomyces cerevisiae S288C 5.8S ribosomal RNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain h
- 60S ribosomal protein L35-A
- Chain j
- 60S ribosomal protein L37-A
- Chain v
- Nucleolar protein 16
- Chain x
- Ribosome production factor 1
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