IL_8V84_084

3D structure

PDB id

8V84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosome biogenesis intermediate (Dbp10 catalytic structure - Overall map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUA*UUAAGC

Length

9 nucleotides

Bulged bases

8V84|1|1|G|3377

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8V84_084 not in the Motif Atlas

Geometric match to IL_5TBW_132

Geometric discrepancy: 0.3998

The information below is about IL_5TBW_132

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_84428.1

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

8V84|1|1|G|3328
8V84|1|1|U|3329
8V84|1|1|A|3330
*
8V84|1|1|U|3373
8V84|1|1|U|3374
8V84|1|1|A|3375
8V84|1|1|A|3376
8V84|1|1|G|3377
8V84|1|1|C|3378

Current chains

Chain 1

Saccharomyces cerevisiae 25S ribosomal RNA

Nearby chains

Chain B

Large ribosomal subunit protein uL3

Chain Z

Ribosome biogenesis protein SSF1

Chain u

Ribosome biogenesis protein RLP24