IL_8V9J_014

3D structure

PDB id

8V9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) (Structure 4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUAC*GAGUGAAAGAGUAC

Length

18 nucleotides

Bulged bases

8V9J|1|A|G|591, 8V9J|1|A|A|595

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8V9J_014 not in the Motif Atlas

Homologous match to IL_4WF9_015

Geometric discrepancy: 0.1963

The information below is about IL_4WF9_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_44923.2

Basepair signature

cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

Number of instances in this motif group

10

Unit IDs

8V9J|1|A|G|569
8V9J|1|A|U|570
8V9J|1|A|A|571
8V9J|1|A|C|572
*
8V9J|1|A|G|583
8V9J|1|A|A|584
8V9J|1|A|G|585
8V9J|1|A|U|586
8V9J|1|A|G|587
8V9J|1|A|A|588
8V9J|1|A|A|589
8V9J|1|A|A|590
8V9J|1|A|G|591
8V9J|1|A|A|592
8V9J|1|A|G|593
8V9J|1|A|U|594
8V9J|1|A|A|595
8V9J|1|A|C|596

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain U

50S Ribosomal Protein L22

Chain W

50S ribosomal protein L24