IL_8V9J_150

3D structure

PDB id

8V9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) (Structure 4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGUAAAG*CG

Length

9 nucleotides

Bulged bases

8V9J|1|a|A|552

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8V9J_150 not in the Motif Atlas

Homologous match to IL_4LFB_022

Geometric discrepancy: 0.0954

The information below is about IL_4LFB_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_20847.2

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

6

Unit IDs

8V9J|1|a|C|549
8V9J|1|a|G|550
8V9J|1|a|U|551
8V9J|1|a|A|552
8V9J|1|a|A|553
8V9J|1|a|A|554
8V9J|1|a|G|555
*
8V9J|1|a|C|862
8V9J|1|a|G|863

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain l

30S ribosomal protein S12

Chain q

30S ribosomal protein S17

Chain u

30S Ribosomal Protein S22