IL_8V9K_021

3D structure

PDB id

8V9K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Rv2629 (Balon) (Structure 5)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAAGC*GUGAUAGC

Length

13 nucleotides

Bulged bases

8V9K|1|A|G|916, 8V9K|1|A|G|920

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8V9K_021 not in the Motif Atlas

Homologous match to IL_5J7L_260

Geometric discrepancy: 0.1471

The information below is about IL_5J7L_260

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

8V9K|1|A|G|789
8V9K|1|A|A|790
8V9K|1|A|A|791
8V9K|1|A|G|792
8V9K|1|A|C|793
*
8V9K|1|A|G|914
8V9K|1|A|U|915
8V9K|1|A|G|916
8V9K|1|A|A|917
8V9K|1|A|U|918
8V9K|1|A|A|919
8V9K|1|A|G|920
8V9K|1|A|C|921

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain E

Large ribosomal subunit protein uL4

Chain N

50S ribosomal protein L15