IL_8V9K_053

3D structure

PDB id

8V9K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Rv2629 (Balon) (Structure 5)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCCAG*CGC

Length

8 nucleotides

Bulged bases

8V9K|1|A|G|1447

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8V9K_053 not in the Motif Atlas

Homologous match to IL_4WF9_050

Geometric discrepancy: 0.206

The information below is about IL_4WF9_050

Detailed Annotation

Major groove minor groove platform with tHH

Broad Annotation

No text annotation

Motif group

IL_06671.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

10

Unit IDs

8V9K|1|A|G|1434
8V9K|1|A|C|1435
8V9K|1|A|C|1436
8V9K|1|A|A|1437
8V9K|1|A|G|1438
*
8V9K|1|A|C|1446
8V9K|1|A|G|1447
8V9K|1|A|C|1448

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain U

Large ribosomal subunit protein uL22

Chain V

Large ribosomal subunit protein uL23