IL_8V9K_074

3D structure

PDB id

8V9K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Rv2629 (Balon) (Structure 5)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAUGG*UGAG

Length

9 nucleotides

Bulged bases

8V9K|1|A|U|1932

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8V9K_074 not in the Motif Atlas

Geometric match to IL_4PMI_008

Geometric discrepancy: 0.2792

The information below is about IL_4PMI_008

Detailed Annotation

tWW and non-canonical cWW

Broad Annotation

tWW and non-canonical cWW

Motif group

IL_28284.1

Basepair signature

cWW-cWW-tWW-cWW

Number of instances in this motif group

3

Unit IDs

8V9K|1|A|C|1930
8V9K|1|A|A|1931
8V9K|1|A|U|1932
8V9K|1|A|G|1933
8V9K|1|A|G|1934
*
8V9K|1|A|U|1960
8V9K|1|A|G|1961
8V9K|1|A|A|1962
8V9K|1|A|G|1963

Current chains

Chain A

23S Ribosomal RNA

Nearby chains