IL_8V9K_078

3D structure

PDB id

8V9K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Rv2629 (Balon) (Structure 5)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGCGAAG*CGAUGUAUA

Length

16 nucleotides

Bulged bases

8V9K|1|A|G|2018, 8V9K|1|A|U|2033, 8V9K|1|A|U|2037

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8V9K_078 not in the Motif Atlas

Homologous match to IL_7A0S_065

Geometric discrepancy: 0.1118

The information below is about IL_7A0S_065

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.6

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

8V9K|1|A|U|2015
8V9K|1|A|G|2016
8V9K|1|A|C|2017
8V9K|1|A|G|2018
8V9K|1|A|A|2019
8V9K|1|A|A|2020
8V9K|1|A|G|2021
*
8V9K|1|A|C|2030
8V9K|1|A|G|2031
8V9K|1|A|A|2032
8V9K|1|A|U|2033
8V9K|1|A|G|2034
8V9K|1|A|U|2035
8V9K|1|A|A|2036
8V9K|1|A|U|2037
8V9K|1|A|A|2038

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain a

Small subunit ribosomal RNA; SSU rRNA