IL_8V9K_085

3D structure

PDB id

8V9K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Rv2629 (Balon) (Structure 5)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GC*GCAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8V9K_085 not in the Motif Atlas

Homologous match to IL_7A0S_071

Geometric discrepancy: 0.0921

The information below is about IL_7A0S_071

Detailed Annotation

Bulged stacked bases

Broad Annotation

Bulged stacked bases

Motif group

IL_24886.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

12

Unit IDs

8V9K|1|A|G|2157
8V9K|1|A|C|2158
*
8V9K|1|A|G|2188
8V9K|1|A|C|2189
8V9K|1|A|A|2190
8V9K|1|A|C|2191

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain u

30S Ribosomal Protein S22

Chain z

Ribosome hibernation factor Balon (Rv2629)