IL_8V9K_095
3D structure
- PDB id
- 8V9K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Rv2629 (Balon) (Structure 5)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GGAGA*UCGUUGUUGAAAUAC
- Length
- 20 nucleotides
- Bulged bases
- 8V9K|1|A|U|2395
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8V9K_095 not in the Motif Atlas
- Homologous match to IL_5J7L_329
- Geometric discrepancy: 0.466
- The information below is about IL_5J7L_329
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_87290.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L
- Number of instances in this motif group
- 1
Unit IDs
8V9K|1|A|G|2347
8V9K|1|A|G|2348
8V9K|1|A|A|2349
8V9K|1|A|G|2350
8V9K|1|A|A|2351
*
8V9K|1|A|U|2383
8V9K|1|A|C|2384
8V9K|1|A|G|2385
8V9K|1|A|U|2386
8V9K|1|A|U|2387
8V9K|1|A|G|2388
8V9K|1|A|U|2389
8V9K|1|A|U|2390
8V9K|1|A|G|2391
8V9K|1|A|A|2392
8V9K|1|A|A|2393
8V9K|1|A|A|2394
8V9K|1|A|U|2395
8V9K|1|A|A|2396
8V9K|1|A|C|2397
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain K
- Large ribosomal subunit protein uL1
- Chain y
- Transfer RNA; tRNA
Coloring options: