3D structure

PDB id
8V9K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Rv2629 (Balon) (Structure 5)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
UAUAC*GAUAG
Length
10 nucleotides
Bulged bases
8V9K|1|A|U|2913, 8V9K|1|A|A|2914
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8V9K_115 not in the Motif Atlas
Homologous match to IL_4WF9_102
Geometric discrepancy: 0.2258
The information below is about IL_4WF9_102
Detailed Annotation
UAA/GAN related, with intercalation
Broad Annotation
UAA/GAN related, with intercalation
Motif group
IL_82016.1
Basepair signature
cWW-L-tHS-L-cWW
Number of instances in this motif group
4

Unit IDs

8V9K|1|A|U|2911
8V9K|1|A|A|2912
8V9K|1|A|U|2913
8V9K|1|A|A|2914
8V9K|1|A|C|2915
*
8V9K|1|A|G|2942
8V9K|1|A|A|2943
8V9K|1|A|U|2944
8V9K|1|A|A|2945
8V9K|1|A|G|2946

Current chains

Chain A
23S Ribosomal RNA

Nearby chains

Chain D
50S ribosomal protein L3
Chain P
50S ribosomal protein L17
Chain R
50S ribosomal protein L19

Coloring options:


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