IL_8V9K_120

3D structure

PDB id

8V9K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Rv2629 (Balon) (Structure 5)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGGAAG*UGCAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8V9K_120 not in the Motif Atlas

Homologous match to IL_4WF9_108

Geometric discrepancy: 0.1802

The information below is about IL_4WF9_108

Detailed Annotation

tHS double platform

Broad Annotation

No text annotation

Motif group

IL_48489.1

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

8

Unit IDs

8V9K|1|A|U|3068
8V9K|1|A|G|3069
8V9K|1|A|G|3070
8V9K|1|A|A|3071
8V9K|1|A|A|3072
8V9K|1|A|G|3073
*
8V9K|1|A|U|3086
8V9K|1|A|G|3087
8V9K|1|A|C|3088
8V9K|1|A|A|3089
8V9K|1|A|G|3090

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain P

50S ribosomal protein L17

Chain R

50S ribosomal protein L19