IL_8V9K_124

3D structure

PDB id

8V9K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Rv2629 (Balon) (Structure 5)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CG*CUAAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8V9K_124 not in the Motif Atlas

Geometric match to IL_5J7L_018

Geometric discrepancy: 0.2413

The information below is about IL_5J7L_018

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_03109.3

Basepair signature

cWW-cWS-tWH-cWW-L

Number of instances in this motif group

6

Unit IDs

8V9K|1|B|C|29
8V9K|1|B|G|30
*
8V9K|1|B|C|56
8V9K|1|B|U|57
8V9K|1|B|A|58
8V9K|1|B|A|59
8V9K|1|B|G|60

Current chains

Chain B

5S Ribosomal RNA

Nearby chains

Chain F

Large ribosomal subunit protein uL5

Chain Q

Large ribosomal subunit protein uL18