IL_8V9K_151
3D structure
- PDB id
- 8V9K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Rv2629 (Balon) (Structure 5)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGUAG*UGAGG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8V9K_151 not in the Motif Atlas
- Homologous match to IL_6CZR_135
- Geometric discrepancy: 0.1316
- The information below is about IL_6CZR_135
- Detailed Annotation
- tSH-tWH-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_17136.6
- Basepair signature
- cWW-tSH-tHW-tHS-cWW
- Number of instances in this motif group
- 16
Unit IDs
8V9K|1|a|C|560
8V9K|1|a|G|561
8V9K|1|a|U|562
8V9K|1|a|A|563
8V9K|1|a|G|564
*
8V9K|1|a|U|737
8V9K|1|a|G|738
8V9K|1|a|A|739
8V9K|1|a|G|740
8V9K|1|a|G|741
Current chains
- Chain a
- 16S Ribosomal RNA
Nearby chains
- Chain h
- Small ribosomal subunit protein uS8
- Chain l
- 30S ribosomal protein S12
- Chain o
- Small ribosomal subunit protein uS15
- Chain q
- 30S ribosomal protein S17
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